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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144874937_144888220_F

Intron Information:

Intron Rank:
136212
Intron Class:
major
Intron Phase:
Intron Coordinates:
144874937 - 144888220
Intron Length:
13284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTA
5'SS Class:
major
3'SS Sequence:
TCCTCCCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTGTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
62.6
43.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79
0.65
0.7
76.5
25.5
Minor 5ss
33.3
-1.9
3.6
47.7
47.8
Minor BPS
49.5
0.04
1.9
68
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023393
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039295
144869769 - 144888652
18884
ENSAPLT00000035597
144869769 - 144888652
18884
ENSAPLT00000029863
144869769 - 144890795
21027
ENSAPLT00000039563
144869769 - 144888652
18884