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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144888372_144890688_F

Intron Information:

Intron Rank:
136213
Intron Class:
major
Intron Phase:
Intron Coordinates:
144888372 - 144890688
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCCA
5'SS Class:
major
3'SS Sequence:
TTTCCACCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTGTTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
64.9
41.1
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
81
0.7
0.8
74.6
29.3
Minor 5ss
37.5
-1.4
3.1
48.7
47
Minor BPS
47.6
-0.2
2
65.33
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023393
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029863
144869769 - 144890795
21027