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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144901029_144928433_F

Intron Information:

Intron Rank:
136514
Intron Class:
major
Intron Phase:
Intron Coordinates:
144901029 - 144928433
Intron Length:
27405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTTTCCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
80.1
0.68
0.7
75.8
26.3
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
56.5
0.28
2.1
85.43
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023548
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033968
144900363 - 144967682
67320
ENSAPLT00000029319
144900363 - 144960837
60475
ENSAPLT00000027695
144899437 - 144928610
29174
ENSAPLT00000025383
144900363 - 144960837
60475