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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144928503_144949633_F

Intron Information:

Intron Rank:
136518
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
144928503 - 144949633
Intron Length:
21131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GGGAACTCCGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTTTGGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
52
0.05
1
43.6
38.3
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
44.4
-0.3
2.6
71.74
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023548
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029319
144900363 - 144960837
60475