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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144928503_144967655_F

Intron Information:

Intron Rank:
136521
Intron Class:
major
Intron Phase:
Intron Coordinates:
144928503 - 144967655
Intron Length:
39153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTAATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.6
40.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.7
0.8
0.8
80.9
36.3
Minor 5ss
33.5
-1.9
2.8
46.7
41.7
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023548
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033968
144900363 - 144967682
67320