About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1449332_1449487_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1449332 - 1449487
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGTG
5'SS Class:
major
3'SS Sequence:
CCCGCACGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
ATCAGCTTCACC
Flanking Amino Acid:
SLIDTNFSEQAGSRSLGCGN
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
66.3
39.4
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
56
0.14
1
45.8
35.5
Minor 5ss
26.7
-2.7
3.6
36.8
47.7
Minor BPS
47.7
-0.2
2.2
61.09
44.2

Associated Gene:

Gene:
SCAP
Ensembl Gene ID:
ENSAPLG00000014099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014751
1445644 - 1468963
23320