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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144975693_144983482_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
144975693 - 144983482
Intron Length:
7790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCCGGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
QGGGRHNWGQA*
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.3
46.2
42.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
44.7
-0.6
3
60
44.6
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
DERL1
Ensembl Gene ID:
ENSAPLG00000026389
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038839
144975510 - 144997193
21684