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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144989792_144991994_R

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
144989792 - 144991994
Intron Length:
2203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GGCAAAATGACAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
MLLFNWICIVITGLAMDMQL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
49.2
-0
1.1
39.4
42.4
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
DERL1
Ensembl Gene ID:
ENSAPLG00000026389
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038839
144975510 - 144997193
21684
ENSAPLT00000028802
144982497 - 144997193
14697