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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_144997369_145000239_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144997369 - 145000239
Intron Length:
2871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
GCTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAATTCTAAACA
Flanking Amino Acid:
GRGPGQAAGGGVIVNITHTA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
60.3
40.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.3
0.7
0.8
75.6
32.9
Minor 5ss
35.6
-1.6
3.5
42.4
44.7
Minor BPS
58.4
0.26
1.7
64.72
41.7

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958