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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145000387_145000817_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145000387 - 145000817
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTATTTTTAAAT
Flanking Amino Acid:
NIYVFDLKGNRFNLVQRTMQ
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
1
71
38.6
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958