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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145006970_145007390_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145006970 - 145007390
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCCCTGTGATC
Flanking Amino Acid:
TLLYKVFAVTRDGRIFVAGG
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
69.5
41.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
66.2
0.36
1
57
42.5
Minor 5ss
33.9
-1.8
3
44.7
43.1
Minor BPS
45.8
-0.3
2
53.94
39.1

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958