About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145007551_145007812_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145007551 - 145007812
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATCCTTTTAACT
Flanking Amino Acid:
PDSFDGGSNQVLGVLSQDNM
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.4
0.77
0.8
77.7
35.4
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
70
0.71
1.2
79.06
37.2

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958