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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145010303_145010404_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145010303 - 145010404
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCCATTTTAATT
Flanking Amino Acid:
KGYGEYPAKYRMFVWRSLLQ
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
79
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.5
0.71
0.9
74.7
38.4
Minor 5ss
42.7
-0.8
3
57.9
46.7
Minor BPS
63
0.49
1.3
71.2
40.9

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958