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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145010552_145010833_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145010552 - 145010833
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTACATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTACACCT
Flanking Amino Acid:
KSRKLLRVLQRTLSALAHWS
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.9
0.58
0.9
69.6
34.9
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
51.7
0.13
2.1
81.08
40.7

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958