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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145010968_145011942_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145010968 - 145011942
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTACAATGGATT
Flanking Amino Acid:
ICFEVVATVVVNFCQHWFEY
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
64.7
0.37
1
73
31.5
Major PPT
86.2
0.81
0.7
85.1
29.7
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
44.5
-0.3
1.9
64.74
39.1

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958