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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145012871_145013866_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145012871 - 145013866
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTTGTAGAATG
Flanking Amino Acid:
LHCNQRQDFEYFFHHRNNLD
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
79.9
0.67
0.9
73.2
36.7
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
46.4
-0.4
2.1
60.83
41.6

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958