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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145014100_145014654_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145014100 - 145014654
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCTCCTTCCATT
Flanking Amino Acid:
RQDEIEYLRERQLMHELEAK
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
75.3
0.57
0.8
74.1
29.9
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
48.3
-0
1.9
69.06
42.6

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958