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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145014808_145015870_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145014808 - 145015870
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATAA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTGTCTTTGAAG
Flanking Amino Acid:
EEKKLAEQRQRLAAVRRELK
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.5
32
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
78.1
0.63
1
79.4
32.9
Minor 5ss
43.4
-0.7
2.8
56
48.1
Minor BPS
63.8
0.29
1.5
67.24
40.8

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958