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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145016938_145018576_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145016938 - 145018576
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCGTGTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
GCAACAATAACT
Flanking Amino Acid:
LESQRQLFEQHLIKDQESST
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
65.6
0.35
1.1
60.9
44.7
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
48
-0
1.9
65.23
44.1

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958