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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145019924_145020344_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145019924 - 145020344
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCA
5'SS Class:
major
3'SS Sequence:
CTCTGTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATGCACTTAATA
Flanking Amino Acid:
KALREAEEKKWEEVIQKKAQ
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.6
34.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
72.3
0.5
1
67.8
37.6
Minor 5ss
39.1
-1.2
3
50.7
45.7
Minor BPS
62.6
0.39
1.5
68.49
37.7

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958