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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145020496_145022054_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145020496 - 145022054
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCATTTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCTCTCCATTT
Flanking Amino Acid:
EKLQREDACFERLRDLKAGR
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
81.9
26.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
77.4
0.62
0.8
71.7
32.6
Minor 5ss
38.5
-1.3
2.9
45.9
43.7
Minor BPS
46
-0.2
2
68.41
43.2

Associated Gene:

Gene:
TBC1D31
Ensembl Gene ID:
ENSAPLG00000010985
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011482
144997214 - 145023171
25958