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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145028371_145030903_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145028371 - 145030903
Intron Length:
2533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
IRRYINKTTQVLAIVMDVFT
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
69.8
42.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.7
0.8
0.6
85.9
21.2
Minor 5ss
30.6
-2.2
3.3
40.1
45.6
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
FAM83A
Ensembl Gene ID:
ENSAPLG00000010979
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011424
145027891 - 145037069
9179