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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145031072_145032503_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145031072 - 145032503
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCGC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTCTTCTTTACT
Flanking Amino Acid:
KLQIAEDLFKNISVRSVTGE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
51.7
45.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
78.9
0.65
0.8
74.2
35.2
Minor 5ss
30.1
-2.3
3.4
42.5
44.3
Minor BPS
73
0.8
1.6
87.52
38

Associated Gene:

Gene:
FAM83A
Ensembl Gene ID:
ENSAPLG00000010979
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011424
145027891 - 145037069
9179