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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145032629_145036519_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145032629 - 145036519
Intron Length:
3891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TTAACGCTAACC
Flanking Amino Acid:
DWRYVLSGSYSFTWLCGQVH
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
82.4
0.73
0.7
73.7
31.4
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
48.9
-0.1
2.4
69.11
41.8

Associated Gene:

Gene:
FAM83A
Ensembl Gene ID:
ENSAPLG00000010979
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011424
145027891 - 145037069
9179