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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145046460_145048655_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145046460 - 145048655
Intron Length:
2196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
CTGCCGCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
DLAYRERHFEKSLREYSSCL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
63.6
0.31
1
54.8
40.2
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011417
145041512 - 145049411
7900