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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145048752_145049027_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145048752 - 145049027
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTAATGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATG
Flanking Amino Acid:
PYSAKRCEPRWFCGETGGEE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.4
0.41
1
58.8
42.7
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
72.1
0.55
1.2
71.21
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011417
145041512 - 145049411
7900