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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145085282_145086693_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145085282 - 145086693
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
ATTTGATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGTATTTGATC
Flanking Amino Acid:
EFAKPVDPQKVPDYATRIKE
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78
0.63
0.9
71
39.4
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
61
0.33
1.5
69.91
36.1

Associated Gene:

Gene:
ATAD2
Ensembl Gene ID:
ENSAPLG00000023462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017245
145084442 - 145096942
12501
ENSAPLT00000019194
145084442 - 145096942
12501