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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145088566_145089560_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145088566 - 145089560
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
TCCTTTTCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTTTTCTTACCC
Flanking Amino Acid:
VAPPEEICGQLIRNAQKTAP
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
75
0.56
0.8
70.3
35
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
70.4
0.62
1.6
78.59
37

Associated Gene:

Gene:
ATAD2
Ensembl Gene ID:
ENSAPLG00000023462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019194
145084442 - 145096942
12501
ENSAPLT00000017245
145084442 - 145096942
12501
ENSAPLT00000023480
145080089 - 145091947
11859
ENSAPLT00000020918
145080423 - 145096103
15681