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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145090849_145092514_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145090849 - 145092514
Intron Length:
1666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TATTCAGGAAAG
Flanking Amino Acid:
LLDELAEKCIDHLNPILQDD
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
88.2
0.86
0.7
85.4
29.3
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
43.3
-0.6
2.4
56.5
43.9

Associated Gene:

Gene:
ATAD2
Ensembl Gene ID:
ENSAPLG00000023462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019194
145084442 - 145096942
12501