About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1450925_1451559_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1450925 - 1451559
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAG
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
LQGHRDVTLYKVAALGLASG
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
59.9
0.25
1.6
59.3
47.1
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
SCAP
Ensembl Gene ID:
ENSAPLG00000014099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014751
1445644 - 1468963
23320