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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145094064_145094438_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145094064 - 145094438
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTAAATAATG
Flanking Amino Acid:
ERQLRVLFEQAYQMRPSIIF
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
100
1.24
0.5
100
0
Major PPT
69.3
0.43
1
63.5
42.8
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
46.7
-0.3
2.1
58.6
42.9

Associated Gene:

Gene:
ATAD2
Ensembl Gene ID:
ENSAPLG00000023462
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020918
145080423 - 145096103
15681
ENSAPLT00000019194
145084442 - 145096942
12501
ENSAPLT00000017245
145084442 - 145096942
12501