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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145099983_145102135_F

Intron Information:

Intron Rank:
147858
Intron Class:
major
Intron Phase:
Intron Coordinates:
145099983 - 145102135
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
AAGTACTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
77.5
0.62
1
72.2
42.7
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
64.9
0.33
1.6
64.41
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029600
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017728
145099943 - 145103057
3115