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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145102251_145102686_F

Intron Information:

Intron Rank:
147859
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
145102251 - 145102686
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGAACGC
5'SS Class:
weak_major
3'SS Sequence:
TCTTTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.5
0.15
1.3
46.2
42.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
26.6
-2.7
3.1
34.3
41.3
Minor BPS
69
0.68
1.6
84.08
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029600
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017728
145099943 - 145103057
3115