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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145106462_145106567_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145106462 - 145106567
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
ACTCCCGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTCACTGTACT
Flanking Amino Acid:
QQLNNIQITRAECCRRT*
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
66.3
45.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
65.6
0.35
1
58.4
36.8
Minor 5ss
39.3
-1.2
2.8
42
44.3
Minor BPS
48.7
-0
2
71.84
44.2

Associated Gene:

Gene:
FBXO32
Ensembl Gene ID:
ENSAPLG00000005288
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005493
145106360 - 145121296
14937