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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145117200_145120351_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145117200 - 145120351
Intron Length:
3152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCA
5'SS Class:
major
3'SS Sequence:
GTATCATTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCATTCACA
Flanking Amino Acid:
KSGGFVGDISSFCKKEDHNK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.8
41.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
72.3
0.5
0.9
65.3
40
Minor 5ss
34
-1.8
3.7
47.9
47.7
Minor BPS
55.8
0.18
2.1
70.6
41

Associated Gene:

Gene:
FBXO32
Ensembl Gene ID:
ENSAPLG00000005288
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030025
145106360 - 145121296
14937
ENSAPLT00000005493
145106360 - 145121296
14937