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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145149854_145151301_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145149854 - 145151301
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTC
5'SS Class:
major
3'SS Sequence:
ATTTATTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTATCTTTATTT
Flanking Amino Acid:
IMQNPVRLIQVYHVSRNTWF
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.3
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
1
77.6
40.7
Minor 5ss
40.5
-1.1
3.5
59
45.7
Minor BPS
64.5
0.53
1.6
77.38
39.4

Associated Gene:

Gene:
KLHL38
Ensembl Gene ID:
ENSAPLG00000005471
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005650
145147811 - 145152776
4966