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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145160341_145161556_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145160341 - 145161556
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
GGTGTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTCATCTAAAGA
Flanking Amino Acid:
LIRVLVTRSETDLPEIKGKF
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
70.1
0.45
0.9
66
40.8
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
46
-0.3
2
54.58
44.7

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122