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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145161670_145162475_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145161670 - 145162475
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAAAG
5'SS Class:
major
3'SS Sequence:
TACTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GGTTTCTTACTG
Flanking Amino Acid:
GDLEKAYLTLVSCAKDCPGY
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
66.7
38.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.4
0.71
0.9
72.8
42
Minor 5ss
32.3
-2
3
36.8
41.6
Minor BPS
56.7
0.07
1.7
60.21
42

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122