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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145164550_145165246_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145164550 - 145165246
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTTTTCCTACTG
Flanking Amino Acid:
LRKVLVTVLEATRDESQQVN
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
76.3
0.59
0.7
72.7
25.5
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
52.9
-0
2
67.26
41

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122