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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145165363_145165957_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
145165363 - 145165957
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCAACAAGG
5'SS Class:
major
3'SS Sequence:
CTTCATTATTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCTTTTCAAAC
Flanking Amino Acid:
SLLIEILCTRMNPLRFDFFS
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
59.6
44.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
57.2
0.16
1.7
69.5
40.4
Minor 5ss
29.8
-2.3
3.9
40.3
39.8
Minor BPS
49.9
-0
1.6
58.73
40.7

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047663
145160221 - 145168117
7897