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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145165448_145165949_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145165448 - 145165949
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGACA
5'SS Class:
major
3'SS Sequence:
CTTATTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
IEILCTRSNKEIINIKEAYK
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
64.4
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.4
0.59
0.8
69.6
36.6
Minor 5ss
27.5
-2.6
3
32.4
42
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122