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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145166121_145167913_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145166121 - 145167913
Intron Length:
1793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTA
5'SS Class:
major
3'SS Sequence:
CCCACCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TTCGCACTAACC
Flanking Amino Acid:
KQKYNALYGKDMAEVLKGDL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.5
38.4
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
67.9
0.4
0.8
60.6
29.1
Minor 5ss
44
-0.7
2.8
59
45.4
Minor BPS
50.5
-0
2.1
68.4
43

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122