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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145168009_145169251_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145168009 - 145169251
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCCCGATTAAAT
Flanking Amino Acid:
KKIHSACKGAGTDEKKIIEV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
46.2
-0.2
2.1
63.72
46

Associated Gene:

Gene:
ANXA13
Ensembl Gene ID:
ENSAPLG00000005494
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005718
145160221 - 145169342
9122