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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14517938_14519353_R

Intron Information:

Intron Rank:
151213
Intron Class:
major
Intron Phase:
Intron Coordinates:
14517938 - 14519353
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CTTGCCATATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTGCCATATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
65.8
0.36
0.9
64.2
36.5
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
48.6
-0.1
2
63.7
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024954
14500295 - 14519547
19253