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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145189708_145190179_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145189708 - 145190179
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACCTCGTAACT
Flanking Amino Acid:
RNQLRYRNNLVKHVKKDERK
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.7
0.71
0.7
77.3
24.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
50.4
0.09
2
68.52
42.2

Associated Gene:

Gene:
FAM91A1
Ensembl Gene ID:
ENSAPLG00000005727
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028529
145187851 - 145210974
23124
ENSAPLT00000005978
145187851 - 145210974
23124