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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145197187_145198234_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145197187 - 145198234
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGCAAATAATT
Flanking Amino Acid:
VPISDDSCIAVPPLEGFVMN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84
0.76
0.8
81.5
35.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
46.5
-0.1
2
69.05
41.3

Associated Gene:

Gene:
FAM91A1
Ensembl Gene ID:
ENSAPLG00000005727
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005978
145187851 - 145210974
23124