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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145198342_145199171_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145198342 - 145199171
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTGATGAATC
Flanking Amino Acid:
SIDEHTNVAELANVLEIDLS
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
48.7
-0.1
2.1
65.88
39.5

Associated Gene:

Gene:
FAM91A1
Ensembl Gene ID:
ENSAPLG00000005727
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028529
145187851 - 145210974
23124
ENSAPLT00000005978
145187851 - 145210974
23124