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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145200448_145200856_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145200448 - 145200856
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCACT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGATCATCTATT
Flanking Amino Acid:
DTDTNSQDDPAETASVSSLN
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
76.5
38.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
81.6
0.71
0.7
81
31
Minor 5ss
38.4
-1.3
2.8
50.7
45.3
Minor BPS
46.5
-0.1
2.1
67.4
43.1

Associated Gene:

Gene:
FAM91A1
Ensembl Gene ID:
ENSAPLG00000005727
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028529
145187851 - 145210974
23124
ENSAPLT00000005978
145187851 - 145210974
23124