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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145208317_145209379_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145208317 - 145209379
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACT
Flanking Amino Acid:
IATHGLCRKESLQKLLHSSR
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.8
0.56
1
71.6
38
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
65.3
0.56
1.7
82.56
39.6

Associated Gene:

Gene:
FAM91A1
Ensembl Gene ID:
ENSAPLG00000005727
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028529
145187851 - 145210974
23124
ENSAPLT00000005978
145187851 - 145210974
23124