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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_145269396_145270087_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145269396 - 145270087
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCCCCACA
Flanking Amino Acid:
EGTNAPFYNEYFVFDFVGPQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
48.2
-0.1
2.2
71.95
40.1

Associated Gene:

Gene:
FER1L6
Ensembl Gene ID:
ENSAPLG00000006119
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006395
145268162 - 145329084
60923